about

The Integrated Genomics Exploration Tools (IGET) website provides online access to a suite of tools for exploring biological pathways and DNA/RNA/protein regulatory elements associated with large-scale gene expression and protein behavior dynamics.

Currently, we offer access to these tools:

FIRE

a motif discovery and characterization program based on mutual information

Molecular Cell (2007) 28(2):337-50

FIRE-pro

a motif discovery and characterization program for proteins based on mutual information

PLoS One. 2010 December 29;5(12):e14444

iPAGE

a functional and categorical enrichment program based on mutual information

Molecular Cell (2009) 36(5):900-911

Additionally, we are pleased to offer access to a viewer client (GUI) for interactive exploration of results. Its underlying result parsing code is also available for use.

Notes

Processing is completed on the titan grid and queries are limited to one day in length.

Additionally, this site incorporates a subset of Mark James' Silk icons.

Contact

Inquiries? Contact us by e-mail.