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NOTICE: This is IGET at Columbia University. Please review our privacy policy. Please let us know if any problems are encountered. Inquiries? Contact us.
The Integrated Genomics Exploration Tools (IGET) website provides online access to a suite of tools for exploring biological pathways and DNA/RNA/protein regulatory elements associated with large-scale gene expression and protein behavior dynamics.
Please see the about page for more information.
Currently, we offer access to these tools:
- FIRE
- a motif discovery and characterization program based on mutual information
- Molecular Cell (2007) 28(2):337-50
- FIRE-pro
- a motif discovery and characterization program for proteins based on mutual information
- PLoS One. 2010 December 29;5(12):e14444
- iPAGE
- a functional and categorical enrichment program based on mutual information
- Molecular Cell (2009) 36(5):900-911
- TEISER
- a limited version of TEISER, a de-novo motif discovery for informative structural elements in RNA. However, we strongly recommend installing the full version of TEISER and using locally as it would give you a significantly deeper analysis (>10-fold). Please refer to the link above to download, install and use TEISER on your own clusters.
- Nature (2012) 485, 264-268
Additionally, we are pleased to offer access to a viewer client (GUI) for interactive exploration of results. Its underlying result parsing code is also available for use.